ASReml 4.0 [01 Jan 2013] ASREML mean model iteration1 Build kr [17 Apr 2014] 64 bit Windows x64 09 Oct 2015 16:48:16.871 128 Mbyte RN Licensed to: WUR 30-apr-2016 ***************************************************************** * Contact support@asreml.co.uk for licensing and support * * * * This is the Beta version containing facilities * * that are included for beta testing. * * * * Please send feedback on any issues to * * asreml.beta@vsni.co.uk * * * *********************************************************** ARG * Folder: D:\PhD-cursus\RN animal !P ped.dat !MAKE Reading pedigree file ped.dat: skipping 0 lines 20200 identities in the pedigree over 1 generations. For first parent labelled Sire, second labelled Dam Sire Sire_of_Sire Dam_of_Sire Dam Sire_of_Dam Dam_of_Dam 100 0 0 10000 0 0 Using an adapted version of Meuwissen & Luo GSE 1992 305-313: PEDIGREE [ped.dat ] has 20200 identities, 50490 Non zero elements GIV0 NRM 20200 7 -7000.79 QUALIFIERS: !MAXIT 100 Reading cows_asreml.dat FREE FORMAT skipping 0 lines Univariate analysis of Pheno Summary of 10000 records retained of 10000 read Model term Size #miss #zero MinNon0 Mean MaxNon0 StndDevn 1 animal !P 20200 0 0 10201 15201 20200 2 sire 0 0 1.0000 50.50 100.00 28.87 3 dam 0 0 101.0 5100. 0.1010E+05 2887. 4 herd 0 0 1.0000 50.50 100.00 28.87 5 hys 0 0 0.2010E+06 0.2505E+06 0.3000E+06 0.2887E+05 6 Am 0 0 -2.064 0.2162E-01 2.146 0.5449 7 Asl 0 0 -1.287 0.2469E-01 1.325 0.3196 8 Av 0 10000 0.000 0.000 0.000 0.000 9 x 0 0 -2.865 -0.1539 1.863 1.074 10 E 0 0 -3.635 0.9171E-02 3.042 0.8424 11 Pheno Variate 0 0 -4.239 0.2671E-01 4.864 1.065 12 mu 1 13 animal.x 20200 1 animal : 20200 9 x : 1 2 US [ 6: 8] 0.3000 0.0000 0.0500 20200 NRM Structure for animal has 40400 levels defined Structure for animal also overlays animal.x Forming 40402 equations: 2 dense. Initial updates will be shrunk by factor 0.316 1 LogL=-5321.88 S2= 0.81797 9998 df : 1 components restrained 2 LogL=-5313.77 S2= 0.79633 9998 df : 1 components restrained 3 LogL=-5306.59 S2= 0.76625 9998 df : 1 components restrained 4 LogL=-5303.78 S2= 0.74323 9998 df 5 LogL=-5301.62 S2= 0.73836 9998 df 6 LogL=-5301.61 S2= 0.73593 9998 df - - - Results from analysis of Pheno - - - Akaike Information Criterion 10611.23 (assuming 4 parameters). Bayesian Information Criterion 10640.07 Model_Term Gamma Sigma Sigma/SE % C Residual SCA_V 10000 1.000000 0.735927 19.08 0 P animal US_V 1 1 0.387951 0.285503 6.17 0 U animal US_C 2 1 -0.263877E-01 -0.194194E-01 -2.11 0 U animal US_V 2 2 0.121038 0.890748E-01 7.68 0 U Covariance/Variance/Correlation Matrix US animal 0.2855 -0.1218 -0.1942E-01 0.8907E-01 Wald F statistics Source of Variation NumDF F-inc 12 mu 1 1.06 9 x 1 0.60 Solution Standard Error T-value T-prev 9 x 1 0.139170E-01 0.179946E-01 0.77 12 mu 1 0.276078E-01 0.285867E-01 0.97 1 animal 20200 effects fitted 13 animal.x 20200 effects fitted 3 possible outliers: see .res file Finished: 09 Oct 2015 16:48:19.181 LogL Converged